{{ define "main" }}

{{ .Content }}



{{/*
  Get all entries with available data into an array
*/}}

{{ $all_entries := slice }}
{{ $valid_db_list := slice "URL" "NA" "N/A" "GENBANK" "PDB" "BioProject" "GEO" "ISRCTN" "Dryad" "PubChem-Substance" "RefSeq" "dbGaP"}}

{{ range $index, $entry := $.Site.Data.assembled.publications }}
{{ $has_data := false }}
  {{ range .xrefs }}
    <!-- {{ if in $valid_db_list .db }} -->
      {{ $has_data = true}}
   <!--  {{ end }} -->
  {{ end }}
  {{ if $has_data }}
    {{ $all_entries = $all_entries | append $entry }}
  {{ end }}
{{ end }}

{{/*
  Count how many entries we have for each data type
*/}}


{{ $all_data_types := slice "Category: Biochemistry" "Category: Drug Discovery" "Category: Genomics & transcriptomics" "Category: Health" "Category: Imaging" "Category: Other" "Category: Proteins" "Category: Public Health" "Category: Serology"}}
{{ $num_entries_per_data_type := dict }}

{{ range $all_data_types }}
  {{ $current_type := . }}
  {{ $num_entries := 0 }}
  {{ range $all_entries }}
    {{ range $key, $content := .labels }}
      {{ if eq $key $current_type}}
          {{ $num_entries = add $num_entries 1}}
      {{ end }}
    {{ end }}
  {{ end }}
  {{ $data_type_num_entries := dict $current_type $num_entries }}
  {{ $num_entries_per_data_type = merge $num_entries_per_data_type $data_type_num_entries }}
{{ end }}

{{/*
  The following bit ensures that it is not necessary to copy the datatypes_to_display list in the Swedish version of the page
*/}}

{{ $datatypes_to_display := slice }}
{{ $path := strings.TrimPrefix "/sv" (strings.TrimRight "/" (string .Page.RelPermalink)) }}
{{ with .Sites.First.GetPage $path }}
    {{ $datatypes_to_display = .Params.datatypes_to_display }}
{{ end }}

{{/*
  Select which entries from the database to display on this page
*/}}

{{ $current_page := .Title }}
{{ $entries_to_display := slice }}
{{ range $all_entries }}
  {{ $correct_type := false }}
  {{ range $key, $content := .labels }}
    {{ if in $datatypes_to_display $key}}
        {{ $correct_type = true}}
    {{ end }}
  {{ end }}
  {{ if and (ne $current_page "All data types") (ne $current_page "Alla datatyper") }}
    {{ if $correct_type }}
      {{ $entries_to_display = $entries_to_display | append . }}
    {{ end }}
  {{ else }}
      {{ $entries_to_display = $all_entries }}
  {{ end }}
{{ end }}
<div class="row">&nbsp;</div>
<div class="row">&nbsp;</div>
<div class="row">&nbsp;</div>
<div class="container">
    <div class="col-lg">
          <div class="row">
            <div class="table-responsive">
              <table class="table table-hover table-bordered" width="100%">
                <thead class="thead-light">
    <tr>
      
      <th scope="col">Accesion</th>
      <th scope="col">Collection date</th>
      <th class="col-md-2">Center name</th>
      <th scope="col">Host</th>
      <th scope="col">Taxonomy</th>
      <th class="col-md-2">Coverage (%)</th>
    </tr>
  </thead>
  <tbody>
    {{ range $index, $entry := $entries_to_display }}
      <tr>
        <td>
          <div class="row mx-0">
            <div class="col">
                <div class="row">
                  <strong><a target="_blank" href="{{.link}}{{ .title }}">{{ .title }}</a></strong>
                </div>
              </div>
          </div>
      </td>
        <td><div class="row mx-0"><div class="col">{{ .published }}</div>
      </div>
        </td>
        <td><div class="row mx-0"></div></td>
        <td><div class="row mx-0">{{.host}}</div></td>
        <td><div class="row mx-auto">{{.taxonomy}}</div></td>
        <td><div class="row mx-0"><div class="col">{{.coverage}}</div></div></td>
      </tr>
    {{ end }}
  </tbody>
</table></div>
</div>

</div>
</div>
</div>


<script>
  $(document).ready(function() {
    $('table.table').DataTable({
        "sDom": '<"top row"<"col-md"i><"col-md"f>>rt<"bottom row"<"col-md"l><"col-md"p>><"clear">',
        "order": [[ 1, "desc" ]],
        "columnDefs": [{ "orderable": false, "targets": 2 }],
        {{ if eq $.Site.Language.LanguageName "English" }}
        "language": {
             "lengthMenu": "Show _MENU_ entries per page",
             "zeroRecords": "Nothing found.",
             "info": "Showing _START_ to _END_ of _TOTAL_ entries.",
             "infoEmpty": "No records available",
             "infoFiltered": "(filtered from _MAX_ total records)",
             "search": "Search:",
             "paginate": {
                "first":      "First",
                "last":       "Last",
                "next":       "»",
                "previous":   "«"
                }
            }
        {{ else }}
        "language": {
             "lengthMenu": "Visa _MENU_ poster per sida",
             "zeroRecords": "Inga resultat",
             "info": "Visar _START_-_END_ av _TOTAL_ poster.",
             "infoEmpty": "Inga resultat",
             "infoFiltered": "(filtrerad av _MAX_ poster)",
             "search": "Sök:",
             "paginate": {
                "first":      "Första",
                "last":       "Sista",
                "next":       "»",
                "previous":   "«"
                }
            }
        {{ end }}
    }
    );
} );
</script>

<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.10.22/js/jquery.dataTables.js"></script>
<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.10.22/js/dataTables.bootstrap4.min.js"></script>

{{ end }}