{{ define "main" }}

{{ .Content }}

{{/*
  Select which entries from the database to display on this page
*/}}

{{ $entries_to_display := slice }}

{{ range $index, $entry := $.Site.Data.publications.publications }}
    {{ $entries_to_display = $entries_to_display | append $entry}}
{{ end }}

<div>{{ if eq $.Site.Language.LanguageName "Greek" }}
  <p><i>Τελευταία ανανέωση: {{ substr $.Site.Data.publications.timestamp 0 10 }}</i></p>
  {{ else }}
  <p><i>Last updated: {{ substr $.Site.Data.publications.timestamp 0 10 }}</i></p>
  {{ end }}
</div>

<div class="container">
  <div class="row">
    <div class="col-lg-2 pl-0 {{ if eq $.Site.Language.LanguageName "Greek" }}mr-5{{ else }}mr-1{{ end }}">
      <h5>{{ (index $.Site.Params.lang_strings .Site.Language.Lang).pubs_field }}</h5>
      <div class="col mb-2 ml-3 form-check">
          {{ if eq $.Site.Language.LanguageName "Greek" }}
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Imaging">Απεικονίσεις</div>
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Genomics & transcriptomics">Γονιδιώματα</div>
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Proteins">Πρωτεΐνες</div>
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Other">Άλλα</div>
          {{ else }}
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Genomics & transcriptomics">Genomics & transcriptomics</div>
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Imaging">Imaging</div>
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Proteins">Proteins</div>
          <div class="row"><input type="checkbox" class="form-check-input" class="form-check-input" name="topic" value="Category: Other">Other</div>
          {{ end }}
      </div>
      
      <h5>{{ (index $.Site.Params.lang_strings .Site.Language.Lang).pubs_year }}</h5>
      <div class="col mb-2 ml-3 form-check">
          <div class="row"><input type="checkbox" class="form-check-input" name="year" value="2020">2020</div>
          <div class="row"><input type="checkbox" class="form-check-input" name="year" value="2021">2021</div>
      </div>
      <h5>{{ (index $.Site.Params.lang_strings .Site.Language.Lang).pubs_funder }}</h5>
      <div class="col mb-2 ml-3 form-check">
          <div class="row"><input type="checkbox" class="form-check-input" name="funder" value="Funder: H2020">H2020</div>
          <div class="row"><input type="checkbox" class="form-check-input" name="funder" value="Funder: KAW/SciLifeLab">KAW/SciLifeLab</div>
          <div class="row"><input type="checkbox" class="form-check-input" name="funder" value="Funder: NordForsk">NordForsk</div>
          <div class="row"><input type="checkbox" class="form-check-input" name="funder" value="Funder: VR">{{ if eq $.Site.Language.LanguageName "Svenska" }}Vetenskapsrådet{{ else }}Swedish Research Council{{ end}}</div>
          <div class="row"><input type="checkbox" class="form-check-input" name="funder" value="Funder: Vinnova">Vinnova</div>
      </div>
    </div>
    <div class="col-lg">
          <div class="row">
            <div class="table-responsive">
              <table class="table table-hover" width="100%">
                <thead class="thead-light">
                  <tr>
                    <th scope="col">{{ (index $.Site.Params.lang_strings .Site.Language.Lang).pubs_pub }}</th>
                    <th scope="col">{{ (index $.Site.Params.lang_strings .Site.Language.Lang).pubs_updated }}</th>
                    <th scope="col">Field/Topic</th>
                    <th scope="col">Publication type</th>
                    <th scope="col">Funder</th>
                    <th scope="col">Data availability</th>
                    <th scope="col">Year</th>
                  </tr>
                </thead>
                <tbody>
                  {{ $valid_db_list := slice "URL" "NA" "N/A" "GENBANK" "PBD" "BioProject" "GEO" "ISRCTN" "Dryad" "PubChem-Substance" "RefSeq" "dbGaP"}}
                  {{ range $index, $entry := $entries_to_display }}
                  {{ $has_data := false }}
                  {{ range .xrefs }}
                    {{ if in $valid_db_list .db }}
                      {{ $has_data = true }}
                    {{ end }}
                  {{ end }}
                    <tr>
                      <td>
                        <b><a target="_blank" href="{{ if .doi }}https://doi.org/{{ .doi }}{{ else }}https://pubmed.ncbi.nlm.nih.gov/{{ .pmid }}{{ end}}">{{ .title }}</a></b><br>
                        <span class="text-muted">{{ with .authors }}
                          {{ $n := sub (len .) 1}}
                          {{ range first $n . }}
                              {{ $family := (index . "family") }}
                              {{ $initials := (index . "initials") }}
                              {{ if not $initials }} {{ $initials = substr (index . "given") 0 1 }} {{ end }}
                              {{ $family }} {{ $initials }},
                          {{ end }}
                          {{ range last 1 . }}
                              {{ $family := (index . "family") }}
                              {{ $initials := (index . "initials") }}
                              {{ if not $initials }} {{ $initials = substr (index . "given") 0 1 }} {{ end }}
                              {{ $family }} {{ $initials }}
                          {{ end }}
                          {{ end }}
                        </span><br>
                        <i>{{ .journal.title }}</i>{{ if .journal.volume }} <b>{{ .journal.volume }}</b>{{ end }}{{if .journal.issue}} ({{ .journal.issue }}){{ end }}{{ if .journal.pages }} {{ .journal.pages }}{{ end }}.{{ if .doi}} DOI: {{ .doi }}{{ end }} {{ range $key, $content := .labels }} {{ if eq $key "Type: Preprint"}} <span class="preprint-icon">preprint</span>{{ end }}{{ end}} {{ if $has_data }}<span class="data-available-icon">data&nbsp;available</span>{{ end }}
                      </td>
                      <td>{{ .published }}</td>
                      <td>{{ range $key, $content := .labels }} {{ if findRE "Category *?" $key }} {{ $key }} {{ end }} {{ end }}</td>
                      <td>{{ range $key, $content := .labels }} {{ if findRE "Type *?" $key }} {{ $key }} {{ end }} {{ end }}</td>
                      <td>{{ range $key, $content := .labels }} {{ if findRE "Funder *?" $key }} {{ $key }} {{ end }} {{ end }}</td>
                      <td>{{ if $has_data }}data available{{ end }}</td>
                      <td>{{ slicestr .published 0 4 }}</td>
                    </tr>
                  {{ end }}
                </tbody>
              </table>
            </div>
          </div>
    </div>
  </div>
</div>

<script>
$(document).ready( function () {
  var table = $('table.table').DataTable({
    "sDom": '<"top row"<"col-md"i><"col-md"f>>rt<"bottom row"<"col-md"l><"col-md"p>><"clear">',
    "order": [[ 1, "desc" ]],
    "columnDefs": [{
      "targets": [ 2,3,4,5,6 ],
      "visible": false
    }],
    {{ if eq $.Site.Language.LanguageName "English" }}
    "language": {
         "lengthMenu": "Show _MENU_ entries per page",
         "zeroRecords": "Nothing found.",
         "info": "Showing _START_ to _END_ of _TOTAL_ entries",
         "infoEmpty": "No records available",
         "infoFiltered": "(filtered from _MAX_ records in total).",
         "search": "Search:",
         "paginate": {
            "first":      "First",
            "last":       "Last",
            "next":       "»",
            "previous":   "«"
            }
        }
    {{ else }}
    "language": {
         "lengthMenu": "Visa _MENU_ poster per sida",
         "zeroRecords": "Inga resultat",
         "info": "Visar _START_-_END_ av _TOTAL_ poster",
         "infoEmpty": "Inga resultat",
         "infoFiltered": "(filtrerad av _MAX_ poster).",
         "search": "Sök:",
         "paginate": {
            "first":      "Första",
            "last":       "Sista",
            "next":       "»",
            "previous":   "«"
            }
        }
    {{ end }}
  }
  );

 $('input:checkbox').on('change', function () {

   var topics = $('input:checkbox[name="topic"]:checked').map(function() {
     return this.value;
   }).get().join('|');

   // filter for publication type, with no regex, no smart filtering, not case sensitive
   table.column(2).search(topics, true, false, false).draw(false);

   // Publications type filter
   var pub_types = $('input:checkbox[name="pub_type"]:checked').map(function() {
     return this.value;
   }).get().join('|');

   table.column(3).search(pub_types, true, false, false).draw(false);

   // Funder filter
   var funders = $('input:checkbox[name="funder"]:checked').map(function() {
     return this.value;
   }).get().join('|');

   table.column(4).search(funders, true, false, false).draw(false);

   // Data availability filter
   var data_available = $('input:checkbox[name="data_available"]:checked').map(function() {
     return this.value;
   }).get().join('|');

   table.column(5).search(data_available, true, false, false).draw(false);

   // Years filter
   var years = $('input:checkbox[name="year"]:checked').map(function() {
     return '^' + this.value + '$';
   }).get().join('|');

   // filter for year, without regex, smart filtering, not case sensitive
   table.column(6).search(years, true, false, false).draw(false);

 });

} );

</script>

<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.10.22/js/jquery.dataTables.js"></script>
<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.10.22/js/dataTables.bootstrap4.min.js"></script>

{{ end }}